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29
What are the specific outcomes of using autologous chondrocyte implantation in canine studies?
query-test-0
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[ "27", "29", "36", "28" ]
How does a healthy knee joint differ from a total knee replacement prosthesis in terms of materials used?
query-test-1
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[ "1" ]
What is the regeneration potential of bone compared to other joint tissues?
query-test-2
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[ "5" ]
What are the challenges in regenerating joint tissues due to the intraarticular joint environment?
query-test-3
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[ "3", "4" ]
What are the current and future clinical practices for cartilage regeneration?
query-test-4
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[ "33", "36" ]
How do the characteristics of articular cartilage compare to those of the meniscus?
query-test-5
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[ "6", "5" ]
What does the graph on subchondral bone densification in sheep studies indicate?
query-test-6
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[ "17" ]
What insights can be drawn from the histological images comparing different treatment groups in cartilage regeneration studies?
query-test-7
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[ "27", "31", "29", "32", "36", "28" ]
How do the cell types and vascularity of articular cartilage and ACL differ?
query-test-8
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[ "6" ]
What are the specific challenges faced by ligament devices in orthopaedic applications?
query-test-9
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[ "113", "114", "118", "111" ]
What role do biomaterials play in the development of joint replacement prostheses?
query-test-10
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[ "57", "119" ]
What are the potential impacts of mechanical loading on dental implants?
query-test-11
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[ "91" ]
What insights can be gained from figures illustrating the mechanical loading of teeth?
query-test-12
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[ "64" ]
What are the specific roles of ECMs in cellular processes that cannot be derived from the document?
query-test-13
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[ "125" ]
What is the primary structural feature of collagen that contributes to its helical formation?
query-test-14
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[ "132" ]
How do ECMs contribute to the positional homeostasis of organs within animals?
query-test-15
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[ "126" ]
How do the roles of integrins in cell-matrix interactions compare to their roles in signal transmission within the cell?
query-test-16
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[ "154" ]
What is the significance of the glycine 'hinge' in the primary structure of collagen?
query-test-17
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[ "132" ]
How do tissue engineering and regenerative medicine differ in their approach to healing damaged tissues?
query-test-18
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[ "162", "163" ]
What role do scaffolds play in tissue engineering?
query-test-19
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[ "162", "166", "181", "167", "160", "179", "180" ]
In what ways do autologous and allogeneic cells differ in their application to tissue engineering?
query-test-20
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[ "174" ]
What types of tissues are unable to regenerate spontaneously?
query-test-21
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[ "179", "176" ]
What are the key factors illustrated in the figures that contribute to successful tissue engineering?
query-test-22
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[ "172", "165", "166", "178", "167", "181", "179", "173", "159", "180" ]
What are some potential challenges in achieving successful tissue integration with biomaterials?
query-test-23
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[ "193", "190" ]
What factors influence the bonding of bone to implants?
query-test-24
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[ "194", "216", "214" ]
What does a microscopic image reveal about the interaction between implants and bone tissue at a specific time point post-implantation?
query-test-25
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[ "220", "210", "221", "206", "208", "219", "211", "205", "218", "207", "215" ]
What insights can be drawn about the long-term effects of implants on surrounding tissue from the diagrams?
query-test-26
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[ "223", "192", "193", "185", "190" ]
How do the diagrams explain the process of osseointegration in dental implants?
query-test-27
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[ "210", "207", "208" ]
What are the differences in tissue response between two types of implant materials as shown in the tables?
query-test-28
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[ "213" ]
What is the role of glycosaminoglycans in maintaining cartilage stiffness?
query-test-29
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[ "270", "269" ]
What are the fundamental principles of linear elastic mechanics as they apply to tissue deformability?
query-test-30
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[ "227" ]
What does the electron microscope photograph reveal about the structure of collagen fibers in the cornea?
query-test-31
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[ "239" ]
In what ways might the amorphous nature of elastin fibers contribute to their mechanical properties?
query-test-32
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[ "265" ]
What insights do the diagrams provide about the quaternary structure of collagen and its periodicity?
query-test-33
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[ "232", "260" ]
What is the primary function of endothelial cells in wound healing?
query-test-34
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[ "284" ]
How might the diagrams illustrate the interaction between different cell types during wound healing?
query-test-35
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[ "280", "297", "298", "300", "276", "304", "277" ]
What insights do the diagrams provide about the synthesis of new collagen in wound healing?
query-test-36
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[ "304", "300", "277", "303" ]
How do the roles of macrophages and endothelial cells compare in the tables related to wound healing processes?
query-test-37
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[ "297" ]
How do fibroblast and prostate cancer cell migration speeds differ on collagen-GAG scaffolds?
query-test-38
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[ "312" ]
What role do integrins play in the adhesion processes of cancer cells?
query-test-39
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[ "316", "315" ]
How might environmental factors influence the observable traits of an organism?
query-test-40
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[ "307", "308" ]
What are the implications of scaffold pore size on skin wound contraction and regeneration?
query-test-41
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[ "317" ]
What happens to fibroblast migration speed as the average pore size of collagen-GAG scaffolds increases?
query-test-42
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[ "310", "317" ]
In what ways could scaffold properties potentially affect cancer cell proliferation and metastasis?
query-test-43
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[ "314", "316" ]
What is the primary advantage of using two-photon microscopy for quantifying ligand density?
query-test-44
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[ "322", "325" ]
How does the proposed methodology enhance the study of collagen-GAG scaffolds?
query-test-45
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[ "326", "323", "324", "325" ]
What are the differences in results obtained from two-photon microscopy and confocal microscopy?
query-test-46
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[ "325" ]
What specific biological mechanism is highlighted in the study of collagen-GAG scaffolds?
query-test-47
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[ "321", "323", "328", "327" ]
How might the visualization of free and bound ligands impact future biomaterial research?
query-test-48
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[ "326", "324" ]
What qualitative insights can be drawn from the figures illustrating ligand density measurements?
query-test-49
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[ "323", "320" ]
In what ways do the ligand density values for different biomaterials compare in the tables?
query-test-50
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[ "320", "324" ]
What is the exact mathematical formula used to describe the sigma-shaped curves in ligand adsorption?
query-test-51
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[ "331", "330" ]
What role does stochastic independence play in ligand adsorption onto biomaterial surfaces?
query-test-52
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[ "330" ]
How does the document describe the transition from noncooperative to cooperative cell behavior?
query-test-53
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[ "333", "332", "334", "331", "335" ]
What information does the document provide about the diffusion of regulators inside and outside a control volume?
query-test-54
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[ "331", "332", "330" ]
What insights can be drawn about the communication between cells during the critical transition to cooperative behavior?
query-test-55
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[ "332", "333" ]
What are the similarities and differences between the two special cases analyzed in the mathematical model of cell behavior transition?
query-test-56
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[ "335", "332", "336", "333" ]
What is the exact percentage increase in nerve regeneration success when using a specific tube material compared to another?
query-test-57
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[ "363" ]
How does the structure of myelinated axons compare to the structure of the endoneurium in peripheral nerves?
query-test-58
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[ "351", "353" ]
What are the key experimental parameters for studying nerve regeneration mentioned in the document?
query-test-59
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[ "379", "394", "381", "384", "376", "389", "361", "372", "383", "387", "363", "371", "359", "382", "393", "388", "354", "360", "373", "397" ]
How does the presence of a tube influence the process of nerve regeneration?
query-test-60
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[ "384", "389", "372", "378", "363", "379", "397", "353" ]
What are the differences in regenerative activity between various tube wall compositions used in nerve regeneration experiments?
query-test-61
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[ "397", "379", "363" ]
What is the observed effect of tube wall permeability on nerve regeneration quality?
query-test-62
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[ "384", "397", "363" ]
What insights can be drawn about the role of tube fillings in nerve regeneration from the experimental data?
query-test-63
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[ "384", "389", "387", "363", "379", "397" ]
How do the diagrams and microscopy images contribute to understanding the anatomy of peripheral nerves?
query-test-64
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[ "352", "358", "370", "350", "356", "375", "381", "351" ]
In terms of axon elongation, how do different tube materials compare in their effectiveness?
query-test-65
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[ "384", "389", "372", "363", "379", "397" ]
How do integrins differ in their roles in cell-matrix adhesion compared to cell-cell adhesion?
query-test-66
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[ "402" ]
What is the significance of the RGD amino acid sequence in adhesion proteins?
query-test-67
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[ "403" ]
How might integrins influence cellular behavior in different environments?
query-test-68
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[ "409" ]
What are the key functions of integrins in cell motility and adhesion?
query-test-69
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[ "409" ]
What does the diagram reveal about the interaction between integrins and extracellular matrix components?
query-test-70
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[ "408", "403", "411", "405", "410", "401", "407", "404", "400", "402" ]
How do integrins contribute to the structural integrity of cells as shown in the figures?
query-test-71
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[ "409", "403", "410", "404", "402" ]
What was the outcome of using collagen-glycosaminoglycan membranes seeded with autologous keratinocytes on porcine wounds?
query-test-72
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[ "437" ]
How does the application of autologous keratinocytes contribute to the process of epithelialization and epidermal regeneration?
query-test-73
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[ "437" ]
What is the minimum cell density required for keratinocytes to form a confluent epidermis on collagen-glycosaminoglycan matrices?
query-test-74
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[ "437" ]
What are the specific patency rates for different types of vascular prostheses?
query-test-75
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[ "461" ]
What is the primary challenge in creating successful vascular grafts for small-diameter vessels?
query-test-76
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[ "471", "485", "457", "484", "489", "460", "482", "454", "470", "481" ]
What are the potential future advancements in vascular prostheses based on current challenges?
query-test-77
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[ "441" ]
How have historical perspectives influenced the development of vascular implants?
query-test-78
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[ "463", "466", "464", "465" ]
What is the compliance rate of a specific material used in vascular prostheses?
query-test-79
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[ "480" ]
What are the implications of compliance mismatch in vascular prostheses on patient outcomes?
query-test-80
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[ "459" ]
How do mechanical factors influence the success of vascular grafts?
query-test-81
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[ "485", "489", "483", "469", "481", "478" ]
What are the components required for cardiac muscle tissue engineering?
query-test-82
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[ "518", "530", "502", "514" ]
What are the key factors to consider when engineering cardiac muscle tissue?
query-test-83
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What does the echocardiography data reveal about the effects of the PEUU cardiac patch on heart function?
query-test-84
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What insights can be drawn from the echocardiography data regarding cardiac function post-treatment?
query-test-85
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How does electrical stimulation contribute to the functional assembly of engineered myocardium?
query-test-86
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[ "513", "515", "514" ]
How do bone and articular cartilage differ in their ability to regenerate spontaneously?
query-test-87
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What are the specific conditions under which skin synthesis in vivo fails to occur?
query-test-88
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How might growth factors influence the process of skin regeneration?
query-test-89
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[ "558" ]
What are the key steps involved in the synthesis of skin in vitro and in vivo?
query-test-90
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How do the effects of growth factors compare to pharmacological agents in skin regeneration?
query-test-91
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What is the significance of the dermal-epidermal junction in the context of skin synthesis?
query-test-92
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In what ways might the interaction between wound contraction and skin regeneration be depicted?
query-test-93
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What are the qualitative aspects of the 'Isomorphous and synchronized tissue replacement rule' in skin regeneration?
query-test-94
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How do the regenerative abilities of different reactants compare in terms of their effectiveness?
query-test-95
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What are the main layers of the skin and their associated structures?
query-test-96
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[ "570" ]
How does the skin's ability to cool itself through sweat evaporation work?
query-test-97
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[ "600" ]
What are the specific molecular pathways involved in the induced regeneration of organs in adults?
query-test-98
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[ "689" ]
What role do myofibroblasts play in wound contraction?
query-test-99
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[ "670", "669", "666", "636" ]
End of preview. Expand in Data Studio

Dataset Card for Vidore Reranker Benchmark : vidore_benchmark_2_biomedical_lectures_v2_reranker_adapted

Dataset Summary

This dataset provides a reranking benchmark based on the VIDORE V2 benchmark, designed to evaluate reranker models in a multimodal retrieval context. The dataset includes a corpus of image data, a set of natural language queries, and the top 25 retrievals (images) returned by a mid-performance multimodal retriever. This setup simulates a realistic retrieval environment where the reranker must learn to surface relevant items that may not already be ranked highly.

Complete benchmark dataset list

The benchmark is composed of those datasets :

  • UlrickBL/vidore_benchmark_economics_reports_v2_reranker_adapted (linked to vidore/economics_reports_v2 corpus)
  • UlrickBL/vidore_benchmark_docvqa_reranker_adapted (linked to vidore/docvqa_test_subsampled corpus)
  • UlrickBL/vidore_benchmark_2_biomedical_lectures_v2_reranker_adapted (linked to vidore/biomedical_lectures_v2 corpus)
  • UlrickBL/vidore_benchmark_2_esg_reports_human_labeled_v2_reranker_adapted (linked to vidore/esg_reports_human_labeled_v2 corpus)
  • UlrickBL/vidore_benchmark_2_esg_reports_v2_reranker_adapted (linked to vidore/esg_reports_v2 corpus)

Dataset Motivation

The purpose of this benchmark is to:

  • Evaluate rerankers independently of retriever performance by fixing the retriever outputs.

  • Focus on the effectiveness of rerankers in identifying relevant samples from mid-quality retrieval sets.

  • Provide detailed statistics on the retrieval and relevance structure to better understand model behavior.

By using a retriever with known mid-level performance on the VIDORE v1 leaderboard, this benchmark offers a challenging but meaningful setting to test reranking capabilities.

The retriever used is : Alibaba-NLP/gme-Qwen2-VL-2B-Instruct (top 23 - 87.8 accuracy)

Dataset Structure

Each sample in the dataset is associated with:

  • query : text query

  • query_id : corresponding query id of the original dataset

  • top_25_image_filenames : ordered list of retrieved image by the retriever

  • top_25_scores : corresponding list with the scores of the top 25 images

  • relevant_image_filenames : list of the true labels / relevant images of the original dataset

How the Dataset Was Constructed

Retriever Used: A multimodal retriever Alibaba-NLP/gme-Qwen2-VL-2B-Instruct

The retriever was used to embed the full corpus of images of the associated dataset (vidore/biomedical_lectures_v2).

For each query, the retriever computed similarity and returned the top 25 most similar corpus images.

These 25 candidates were labeled using the ground-truth relevance annotations from VIDORE v2.

Only retrieved items are considered during evaluation — non-retrieved relevant samples are ignored to focus on reranking.

Dataset Statistics

Here are some key dataset statistics:

Metric Value
Number of queries 640
Corpus size 1020
Average # relevant images per query 3.22
Average # retrieved relevant images in top 25 1.99
% of queries with at least one relevant retrieved 91.25%
Avg. position of first relevant image 3.84
Avg. position of last relevant image 7.84
NGCD@5 (Normalized Gain Cumulative Discounted at 5) 0.5413

Use this dataset

To use this dataset, you can create pairs of queries and images by linking a query and an image from the corpus of the top 25 list and score it with your model to rerank the top 25 list.

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Collection including UlrickBL/vidore_benchmark_2_biomedical_lectures_v2_reranker_adapted