Third-party notices
This bundle contains generated predictions and processed data from several upstream resources. The terms listed below apply to their respective components; they are not replaced by a single bundle-wide license.
UNI2-H
The distributed GHIST+ checkpoints do not contain UNI2-H tensors. Users obtain the official checkpoint directly from:
- Repository: https://huggingface.co/MahmoodLab/UNI2-h
- File: pytorch_model.bin
Access and use are governed by the upstream UNI2-H terms, including the recorded CC BY-NC-ND 4.0 and noncommercial-use conditions. Reconstructed checkpoints that incorporate UNI2-H remain subject to those terms.
Public source datasets
The evaluation inputs are processed derivatives of public 10x Genomics Xenium datasets, including:
- Atera WTA FFPE Human Breast Cancer
- Xenium FFPE Human Breast Cancer Sample 1, Replicates 1, 2, and 4
- Xenium Prime 5K Pan-Tissue and Pathways Panel, FFPE Human Breast Cancer
Source: https://www.10xgenomics.com/datasets
The source datasets are distributed by 10x Genomics under their stated terms and CC BY 4.0 notices. Files in this bundle are modified/processed versions, not unmodified source archives.
SpatialEx
SpatialEx comparison outputs were generated with code from:
- Repository: https://github.com/KEAML-JLU/SpatialEx
- Upstream code license: MIT
Outputs generated using UNI2-H are also subject to the applicable UNI2-H noncommercial terms.
PASTA
PASTA comparison outputs were generated from:
- Repository: https://github.com/rx-li/PASTA
- Archived release: https://doi.org/10.5281/zenodo.17336118
Refer to the upstream repository, release record, and publication for the applicable terms and citation.
Phoenix
Phoenix comparison outputs were generated from:
- Repository: https://github.com/peng-lab/phoenix
- Model repository: https://huggingface.co/peng-lab/phoenix
The Phoenix code terms are PolyForm Noncommercial 1.0.0 and the model weights are CC BY-NC 4.0. The released files are generated predictions, not Phoenix code or model weights.
GHIST+ source code
GHIST+ source code and its license are provided separately at: https://github.com/SydneyBioX/GHIST_plus