aatu18 commited on
Commit
36b6975
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1 Parent(s): 3516642

add single gene amp example

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Files changed (1) hide show
  1. app.py +4 -2
app.py CHANGED
@@ -31,7 +31,8 @@ EXAMPLE_INPUTS = [
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  "What fraction of cases have simple somatic mutations or copy number variants in ALK in Lung Adenocarcinoma TCGA-LUAD project in the genomic data commons?",
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  "How often is microsatellite instability observed in Colon Adenocarcinoma TCGA-COAD project in the genomic data commons?",
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  "How often is the BRAF V600E mutation found in Skin Cutaneous Melanoma TCGA-SKCM project in the genomic data commons?",
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- "What is the co-occurence frequency of IDH1 R132H and TP53 R273C simple somatic mutations in the low grade glioma project TCGA-LGG in the genomic data commons?"
 
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  ]
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  EXAMPLE_LABELS = [
@@ -41,7 +42,8 @@ EXAMPLE_LABELS = [
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  "copy number variants or somatic mutations",
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  "microsatellite-instability",
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  "simple somatic mutation",
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- "combination somatic mutations"
 
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  ]
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  "What fraction of cases have simple somatic mutations or copy number variants in ALK in Lung Adenocarcinoma TCGA-LUAD project in the genomic data commons?",
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  "How often is microsatellite instability observed in Colon Adenocarcinoma TCGA-COAD project in the genomic data commons?",
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  "How often is the BRAF V600E mutation found in Skin Cutaneous Melanoma TCGA-SKCM project in the genomic data commons?",
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+ "What is the co-occurence frequency of IDH1 R132H and TP53 R273C simple somatic mutations in the low grade glioma project TCGA-LGG in the genomic data commons?",
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+ "In Lung Adenocarcinoma TCGA-LUAD project data from the genomic data commons, what is the frequency of ALK amplification?"
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  ]
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  EXAMPLE_LABELS = [
 
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  "copy number variants or somatic mutations",
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  "microsatellite-instability",
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  "simple somatic mutation",
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+ "combination somatic mutations",
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+ "single gene amplification"
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  ]
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