Update README.md
Browse files15 cell types (16 output classes including background) edited
README.md
CHANGED
|
@@ -14,10 +14,10 @@ tags:
|
|
| 14 |
|
| 15 |
# HNE2Cell — H&E Whole-Slide Image Cell Detection & Classification
|
| 16 |
|
| 17 |
-
HNE2Cell detects and classifies **
|
| 18 |
It takes 256×256 px patches as input and outputs per-cell contours, centroids, and type labels.
|
| 19 |
|
| 20 |
-
##
|
| 21 |
|
| 22 |
| ID | Cell Type | Color |
|
| 23 |
|----|-----------|-------|
|
|
@@ -261,7 +261,7 @@ python patchify.py \
|
|
| 261 |
python inference.py \
|
| 262 |
--input_dir /path/to/patch_folders \
|
| 263 |
--output_dir /path/to/results \
|
| 264 |
-
--model_path ./
|
| 265 |
--magnification 40 \
|
| 266 |
--batch_size 32
|
| 267 |
```
|
|
|
|
| 14 |
|
| 15 |
# HNE2Cell — H&E Whole-Slide Image Cell Detection & Classification
|
| 16 |
|
| 17 |
+
HNE2Cell detects and classifies **15 cell types (16 output classes including background)** from H&E-stained whole-slide images (WSI).
|
| 18 |
It takes 256×256 px patches as input and outputs per-cell contours, centroids, and type labels.
|
| 19 |
|
| 20 |
+
## Output Classes (background + 15 cell types)
|
| 21 |
|
| 22 |
| ID | Cell Type | Color |
|
| 23 |
|----|-----------|-------|
|
|
|
|
| 261 |
python inference.py \
|
| 262 |
--input_dir /path/to/patch_folders \
|
| 263 |
--output_dir /path/to/results \
|
| 264 |
+
--model_path ./HNE2cell_pub_patch73_jit.pt \
|
| 265 |
--magnification 40 \
|
| 266 |
--batch_size 32
|
| 267 |
```
|